English version




Since most of these papers are published, the copyright has been transferred to the respective publishing houses. Therefore, the papers cannot be duplicated for commercial purposes. If you wish to receive a paper from the list, please send me a message by e-mail.

Journals

  1. Shah A.A., Folino G., Krasnogor N., Towards High-Throughput, Multi-Criteria Protein Structure Comparison and Analysis,
    IEEE Transactions on NanoBioscience, 9:1-12, 2010.

  2. G. Folino, C. Mastroianni, Bio-Inspired Algorithms for Distributed Systems,
    Future Generation Computer Systems, Elsevier Science, vol. 26, Issue 1, pp 87-96, January 2010.

  3. Folino G., Pizzuti C., Spezzano G., An Ensemble-based Evolutionary Framework for coping with Distributed Intrusion Detection,
    Genetic Programming and Evolvable Machines, Springer, Volume 11, Number 2, June 2010. PDF Draft

  4. Folino G., Forestiero A., Papuzzo G., Spezzano G., A Grid Portal for Solving Geoscience Problems using Distributed Knowledge Discovery Service,
    Future Generation Computer Systems, Elsevier, vol. 26, Issue 1, pp 87-96, January 2010. PDF Draft

  5. Folino, G., Forestiero A., Spezzano G: An Adaptive Flocking Algorithm for Performing Approximate Clustering.,
    Information Sciences (Inf. Sci.), Elsevier, Vol. 179, Issue 18, August 2009. PDF Draft

  6. Folino G., Pizzuti C., Spezzano G., Training Distributed GP Ensemble with a Selective Algorithm based on Clustering and Pruning for Pattern Classification,
    IEEE Transactions on Evolutionary Computation, Vol. 12, Issue 4, pp. 458-468, August 2008. PDF Draft

  7. Angiulli F., Folino G., Distributed Nearest Neighbor Based Condensation of Very Large Datasets,
    IEEE Transactions on Knowledge and Data Engineering, vol. 19, No. 12, pp. 1593-1606, Decembre 2007 (Featured article from the December issue). PDF Draft

  8. Folino G., Spezzano G., An Autonomic Tool for Building Self-Organizing Grid-enabled Applications,
    Future Generation Computer System, Elsevier, Volume 23, Issue 5, Pages 671-679, June 2007. PDF Draft

  9. Folino G., Pizzuti C., Spezzano G., GP Ensembles for Large Scale Data Classification,
    IEEE Transactions on Evolutionary Computation, vol. 10, No. 5, pp. 604- 616, October 2006. PDF Draft

  10. Folino G., Forestiero A., Spezzano G., A Jxta based Asynchronous Peer-to-Peer Implementation of Genetic Programming,
    Journal of Software, Academy Publisher, Vol. 1, N. 2, pp. 12-23, August 2006. PDF Draft

  11. Folino G., Mendicino G., Senatore A., Spezzano G., Straface S., A model based on cellular automata for the parallel simulation of 3D unsaturated flow,
    Parallel Computing, vol. 32, No. 5-6, pp. 357-376, June 2006. PDF Draft

  12. Folino G., Forestiero A., Papuzzo G., Spezzano G., MOSE': a Grid-enabled Software Platform to Solve Geoprocessing Problems,
    Il Nuovo Cimento, Vol. 28 C, N.2, Marzo-Aprile 2005.

  13. Folino G., Pizzuti C., Spezzano G., A Scalable Cellular Implementation of Parallel Genetic Programming,
    IEEE Transactions on Evolutionary Computation, Vol. 7, No. 1, pp. 37-53, February 2003. PDF Draft

  14. Folino G., Pizzuti C., Spezzano G., Parallel Hybrid Method for SAT that Couples Genetic Algorithms and Local Search,
    IEEE Transactions on Evolutionary Computation, vol.5, no. 4, pp. 323-334, August 2001. PDF Draft

Recent bioinformatics papers

  1. G. Folino, F. Gori, Mike S. M. Jetten, E. Marchiori: Evidence-based Clustering of Reads and Taxonomic Analysis of Metagenomic Data. PRIB 2009, LNCS, Sheffield, 7-9 September 2009.

  2. G. Folino, F. Gori, Mike S. M. Jetten, E. Marchiori: Optimal BLAST-based Clustering of Metagenome Short Reads. M3 SIG workshop at ISMB 2009, June 27, 2009, Stockholm, Sweden.

  3. G. Folino, F. Gori, Mike S. M. Jetten, E. Marchiori: Clustering Metagenome Short Reads Using Weighted Proteins. EvoBIO 2009, LNCS, 152-163, Tübingen, Germany, April 15-17, 2009. PDF Draft

  4. G. Folino, A. A Shah, and N. Krasnogor.: On the Storage, Management and Analysis of (Multi) Similarity for Large Scale Protein Structure Datasets in the Grid, In: Proceedings of IEEE CBMS 2009, the 22nd IEEE International Symposium on Computer-Based Medical Systems, Albuquerque, New Mexico, USA, August 3-4, 2009.

  5. A. A. Shah, D. Barthel, G. Folino, N. Krasnogor: Performance Evaluation of Protein Structure Comparison Algorithms Under Integrated Resource Management Environment for MPI Jobs. ISPA 2008: 817-822, Sydney, Australia, December 10-12, 2008.

  6. G. Folino, A. A Shah, D. Barthel and N. Krasnogor.: Towards a Distributed Framework for Protein (Structure) Comparison, Knowledge, Similarity and Information (ProCKSI), In: UK eScience All Hands Meeting (AHM-2008), Edinburgh, UK, Sep 8-11, 2008.
Book Chapters

  1. Folino G., Forestiero A., Spezzano G., Swarming Agents for Decentralized Clustering in Spatial Data, Handbook of Bioinspired Algorithms and Applications, Editors: S. Olariu and A.Y. Zomaya, Chapman & Hall/CRC Computer & Information Science Series, Vol. 7, September 2005.
Conferences

  1. G. Folino, F. Angiulli., A Grid-based Architecture for Nearest Neighbor Based Condensation of Huge Datasets, In Proceedings of the HPDC 2008 Conference & Co-Located Workshops, ACM Press, Boston, USA, June 2008.

  2. Folino G., Pizzuti C., Spezzano G., An Adaptive Distributed Ensemble Approach to Mine Concept-drifting Data Streams, Proc. of ICTAI'07, IEEE Computer Society, Patras, Greece, October 2007. PDF Draft

  3. Angiulli F., Folino G., Efficient Distributed Data Condensation for Nearest Neighbor Classification, A.-M. Kermarrec, L. Boug´e, and T. Priol (Eds.), Euro-Par 2007, LNCS 4641, pp. 330-339, August 2007.

  4. Folino G., Pizzuti C., Spezzano G., Improving Cooperative GP Ensemble with Clustering and Pruning for Pattern Classification, Proc. of GECCO'07 Genetic and Evolutionary Computation Conference, ACM/SIG, London, UK, July 2007.

  5. Folino G., Forestiero A., Papuzzo G., Spezzano G., Content-based mining for solving geoprocessing problems on grids, Proceedings of the HPDC 2007 Conference & Co-Located Workshops, ACM Press, Monterey, California, USA, pp. 65-72, June 2007.

  6. Folino G., Spezzano., Mining Distributed Evolving Data Streams using Fractal GP Ensembles, EUROGP 2007, LNCS vol. 4445, Springer Verlag, pp. 160-169, Valencia, Spain, April, 2007.

  7. Folino G., Pizzuti C., Spezzano G., Improving Cooperative GP Ensemble with Clustering and Pruning for Pattern Classification, Proc. of GECCO'06 Genetic and Evolutionary Computation Conference, ACM/SIG, Seattle, USA, July 2006.

  8. Folino G., Spezzano., P-CAGE: An Environment for Evolutionary Computation in Peer-to-Peer Systems, EUROGP 2006, LNCS vol. 3905, Springer Verlag, pp. 341 - 350, Budapest, Hungary, April 10-12, 2006.

  9. G. Folino, A. Forestiero, G. Spezzano, Swarm-based Distributed Clustering in Peer-to-Peer Systems, EA'2005, 7th International Conference on Artificial Evolution, LNCS, Springer-Verlag., 3871/2006, Lille, France, October 2005.

  10. M. Cannataro, C. Comito, A. Congiusta, G. Folino, C. Mastroianni, A. Pugliese, G. Spezzano, D. Talia, and P. Veltri. A General Architecture for Grid-Based PSE Toolkits, Proc. of the PARA'04 Workshop on state of the art in Scientific Computing, Copenhagen, Denmark, June 2004, published in LNCS 3732 / 2006, pp. 656 - 664.

  11. Folino G., Pizzuti C., Spezzano G., GP Ensembles for Improving Multi-class Prediction Problems, AI*IA Workshop on Evolutionary Computation (GSICE 2005), Milan, September 2005.

  12. G. Folino, C. Pizzuti, G. Spezzano, GP Ensemble for Distributed Intrusion Detection Systems, ICAPR 2005, 3rd International Conference on Advances in Pattern Recognition, LNCS, Springer Verlag, 3686/2005, Bath, UK, August 2005. PDF Draft

  13. G. Folino, C. Pizzuti, G. Spezzano, An Evolutionary Ensemble Approach for Distributed Intrusion Detection EA'2005, 7th International Conference on Artificial Evolution, Lille, France, October 2005.

  14. Folino G., Spezzano G., An Autonomic Middleware for Grid-enabled Self-Organizing Applications, PDCN 2005, Innsbruck, Austria, February 2005.

  15. Folino G., Spezzano G., CAMELotGrid: A Grid-based PSE for Autonomic Cellular Applications, PDP 2005, IEEE Computer Society, Lugano, Switzerland, February 2005.

  16. Folino G., Pizzuti C., Spezzano., Boosting technique for Combining Cellular GP Classifiers, EUROGP 2004, LNCS vol. 3003, Springer Verlag, Coimbra, Portugal, April 2004.

  17. G. Folino, A. Forestiero, G. Spezzano, Discovering Clusters in Spatial Data using Swarm Intelligence, ECAL'2003, LNCS, Springer-Verlag, 14-17 Sept., Dortmunt, Germany, 2003.

  18. G. Folino, G. Spezzano, SPARROW: A Spatial Clustering Algorithm using Swarm Intelligence, AIA'2003, Innsbruck 10-13 Febbraio 2003.

  19. G. Folino, C. Pizzuti, G. Spezzano, L. Vanneschi, M. Tomassini, Diversity Analysis in Cellular and Multipopulation Genetic Programming, CEC03, IEEE Computer Society, 2003. PDF Draft

  20. Folino G., Pizzuti C., G. Spezzano, Ensemble Techniques for Parallel Genetic Programming based Classifiers, EUROGP 2003, LCNS Springer-Verlag, 2003. PDF Draft

  21. Gianluigi Folino, Agostino Forestiero, Giandomenico Spezzano, Swarming Agents for Discovering Clusters in Spatial Data, ISPDC 2003, 72-79, IEEE Computer Society, 2003.

  22. Folino G., Spezzano G., An Adaptive Flocking Algorithm for Spatial Clustering, Proc. of Seventh International Conf. on Parallel Problem Solving from Nature, PPSN'2002, Springer-Verlag, Granada, Spain, September 7 - 11, 2002. PDF Draft

  23. Folino G., Pizzuti C., G. Spezzano, Improving Induction Decision Trees with Parallel Genetic Programming, Proc. of 10th Euromicro Workshop on Parallel, Distributed and Network-based Processing, PDP 2002, IEEE Computer Society, pp. 181-187, January 2002.

  24. Folino G., Pizzuti C., Spezzano G., Parallel Genetic Programming for Decision Tree Induction, Proc. of the 13th IEEE Int. Conference on Tools with Artificial Intelligence ICTAI'2001, IEEE Computer Society, Dallas, November 2001.

  25. Folino G., Spezzano G., Predictability of Cellular Programs Implemented with CAMELot, Proc. of the 9th Euromicro Workshop on Parallel and Distributed Processing PDP'2001, IEEE Computer Society, pp. 468-474, February 2001.

  26. Folino G., Pizzuti C., Spezzano G, CAGE: A Tool for Parallel Genetic Programming Applications, Proc. of the 4rd European Conference on Genetic Programming EuroGP '2001, LNCS 2038, Springer-Verlag, pp. 64-73, 2001. PDF Draft

  27. Folino G., Spezzano G., Scalability Analysis and Performance Prediction for Cellular Programs on Parallel Computers, Proc. of the Fourth International Conference on Cellular Automata for Research and Industry ACRI'2000, Springer, pp. 37-46, Karlsruhe, Germany, October 2000.

  28. Folino G., Pizzuti C., Spezzano G., Scalable Classification of Large Data Sets by Parallel Genetic Programming, Proc. of the Workshop on Distributed and Parallel Systems DAPSYS'2000, Distributed and parallel systems: from instruction parallelism to cluster computing, Kluwer Academic Publishers, pp. 87-90, Lake Balaton, Hungary, September 2000.

  29. G. Folino, G. Spezzano, A Problem Solving Environment for Interactive Simulation of Bioremediation Models on Parallel Computers, Proc. of the 16th IMACS World Congress 2000 on Scientific Computation, Applied Mathematics and Simulation, Lausanne, August 2000.

  30. Folino G., Pizzuti C., Spezzano G., Genetic Programming and Simulated Annealing: A Hybrid Method to Evolve Decision Trees, Proc. of the 3rd European Conference on Genetic Programming EuroGP '2000, LNCS 1802, Springer-Verlag, pp. 294-303, Edinburgh, April 2000. PDF Draft

  31. Folino G., Spezzano G. A Cellular Environment for Steering High Performance Scientific Computations, Parallel Computing: Fundamentals & Applications Proceedings of the International Conference ParCo'99, E. H. D'Hollander and J. R. Joubert and F. J. Peters and H. Sips (Eds.), Delft, The Netherlands, pp. 493-500, Imperial College Press, 2000.

  32. Folino G. , Spezzano G., CELLAR: A High Level Cellular Programming Language with Regions, Proc. of the 8th Euromicro Workshop on Parallel and Distributed Processing PDP'2000, IEEE Computer Society, pp. 259-266, January 2000.

  33. Folino G., Spezzano G., Bioremediation Experiments using Interactive Computational Steering on High Performance Computers, Proc. of Fifth European SGI/Cray Massively Parallel Processing Workshop, Bologna, September 1999.

  34. Folino G., Pizzuti C., Spezzano G., A Cellular Genetic Programming Approach to Classification, Proc. of GECCO'99 Genetic and Evolutionary Computation Conference, Morgan Kaufmann Publishers, S. Francisco, CA, pp. 1015-1026, July 1999. PDF Draft

  35. Folino G., Spezzano G., Un Ambiente Parallelo per la Simulazione e lo Steering Interattivo di Applicazioni Scientifiche, Atti del Convegno Annuale AICA'99, AICA, Abano Terme, pp. 178-189, September 1999.

  36. Folino G., Pizzuti C., Spezzano G., Combining Cellular Genetic Algorithms and Local Search for Solving Satisfiability problems, Proc. of ICTAI'98 10th IEEE International Conference Tools with Artificial Intelligence, IEEE Computer Society, pp. 192-198 , November 1998.

  37. Folino G., Spezzano G., D. Talia, Evaluating and Modeling Communication Overhead of MPI Primitives on the Meiko CS-2, Proc. of EuroPVM/MPI'98, LNCS 1497, Springer-Verlag, pp. 27-35, September 1998.

  38. Folino G., Pizzuti C., Spezzano G., Solving the Satisfiability Problem by a Parallel Cellular Genetic Algorithm, Proc. of the 24th EUROMICRO Conference, IEEE Computer Society, pp. 715-722, Sweden, August 1998. PDF Draft

  39. Folino G., Spezzano G., Talia D., Performance Evaluation and Modeling of MPI Communications on the Meiko CS-2, Proc. of HPCN Europe '98, LNCS, Springer-Verlag, pp. 932-936, April 1998.